无法在conda环境中安装bioconda软件包(Unable to install bioconda packages in conda environments)

无法在conda环境中安装bioconda软件包(Unable to install bioconda packages in conda environments) python

我试图从anaconda的Bioconda频道安装一些软件包，但即使频道已添加，我也会遇到以下错误：

C:\Users\matti>conda install -c bioconda pybedtools Solving environment: failed PackagesNotFoundError: The following packages are not available from current channels: - pybedtools Current channels: - https://conda.anaconda.org/bioconda/win-64 - https://conda.anaconda.org/bioconda/noarch - https://conda.anaconda.org/conda-forge/win-64 - https://conda.anaconda.org/conda-forge/noarch - https://repo.continuum.io/pkgs/main/win-64 - https://repo.continuum.io/pkgs/main/noarch - https://repo.continuum.io/pkgs/free/win-64 - https://repo.continuum.io/pkgs/free/noarch - https://repo.continuum.io/pkgs/r/win-64 - https://repo.continuum.io/pkgs/r/noarch - https://repo.continuum.io/pkgs/pro/win-64 - https://repo.continuum.io/pkgs/pro/noarch - https://repo.continuum.io/pkgs/msys2/win-64 - https://repo.continuum.io/pkgs/msys2/noarch - https://conda.anaconda.org/daler/win-64 - https://conda.anaconda.org/daler/noarch - https://conda.anaconda.org/anaconda-fusion/win-64 - https://conda.anaconda.org/anaconda-fusion/noarch

对于bowtie2等其他bioconda软件包也会发生这种情况。 我已经尝试了普通的pip install和easy_install，但那些都不起作用。 有任何想法吗？

I am trying to install some packages from the Bioconda channel in anaconda but even though the channel is added, I get to following error:

C:\Users\matti>conda install -c bioconda pybedtools Solving environment: failed PackagesNotFoundError: The following packages are not available from current channels: - pybedtools Current channels: - https://conda.anaconda.org/bioconda/win-64 - https://conda.anaconda.org/bioconda/noarch - https://conda.anaconda.org/conda-forge/win-64 - https://conda.anaconda.org/conda-forge/noarch - https://repo.continuum.io/pkgs/main/win-64 - https://repo.continuum.io/pkgs/main/noarch - https://repo.continuum.io/pkgs/free/win-64 - https://repo.continuum.io/pkgs/free/noarch - https://repo.continuum.io/pkgs/r/win-64 - https://repo.continuum.io/pkgs/r/noarch - https://repo.continuum.io/pkgs/pro/win-64 - https://repo.continuum.io/pkgs/pro/noarch - https://repo.continuum.io/pkgs/msys2/win-64 - https://repo.continuum.io/pkgs/msys2/noarch - https://conda.anaconda.org/daler/win-64 - https://conda.anaconda.org/daler/noarch - https://conda.anaconda.org/anaconda-fusion/win-64 - https://conda.anaconda.org/anaconda-fusion/noarch

This is also happens for other bioconda packages like bowtie2. I have tried regular pip install and easy_install but those do not work either. Any ideas?

最满意答案

从你的命令行看来，你在窗口上。 在pybedtools上有几个pybedtools，然而，如果我pybedtools研究它们，它们都是用于Linux平台的。

如果你在Windows 10上，你可以考虑设置'windows子系统for linux'（也可能是Xming），安装conda，然后安装pybedtools 。 这显然是一种冗长的方法，但会为你开辟许多生物农药包

From your command line it appears you are on windows. There are several veresions of pybedtools on bioconda, however, if I grep through them, they are all for the linux platform.

If you're on Windows 10, you could consider setting up the 'windows subsystem for linux' (and possibly Xming), installing conda, and then installing pybedtools. This is obviously a long-winded approach, but would open up many bioconda packages to you